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Topics Sequence Formats and Retrieval: DNA databases: Embl, Genbank, DDBJ Protein databases: Uniprot Entrez - seach sequence information, including Refseq BLAST Genome Browsing : Ensembl - full coverage including BioMart VEGA UCSC De novo analysis of Sequence: VEGA DNA analysis - ORF finder Alignment of splicing cDNA to genomic DNA - Spidey, Est2genome, SIM4 Multiple Sequence Alignment - CLUSTALW Alignment viewing and Editing- Jalview, GeneDoc Exploring Function and Disease: Understanding Protein Function - from domains to structure (covering Pfam, InterPro, TreeFam CDD, CATH, SCOP, PDB, MSD) Proteins as part of functional networks - iPfam, IntAct Secondary Structure predictions Disease databases COSMIC, OMIM, DECIPHER Mapping disease associated SNPs to Proteins - Polyphen, SNPs 3D Rfam and microRNAs (miRBase) Sequence Variation: Ensembl SNP information, Geneview in dbSNP Glovar, JSNP, HGVBase Genotyping Haplotypes and HapMap Haploview Comparative Sequence Analysis: Homologous gene identification - Paralogues and Orthologues Ensembl - orthologue prediction, MultiContigView EntrezGene - BLink, Homologene Comparative Genome Analysis - UCSC, Zpicture, VISTA

Topics Sequence Formats and Retrieval: DNA databases: Embl, Genbank, DDBJ Protein databases: Uniprot Entrez - seach sequence information, including Refseq BLAST Genome Browsing : Ensembl - full coverage including BioMart VEGA UCSC De novo analysis of Sequence: VEGA DNA analysis - ORF finder Alignment of splicing cDNA to genomic DNA - Spidey, Est2genome, SIM4 Multiple Sequence Alignment - CLUSTALW...

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